Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs231921 | chr16:20661761 | C/T | 4.03E-6 | 489 | 15.9 | 16.4 | 20.68 | KM Plot |
| THCA | rs231923 | chr16:20665132 | G/A | 4.03E-6 | 489 | 15.9 | 16.4 | 20.68 | KM Plot |
| THCA | rs231924 | chr16:20665217 | A/G | 4.03E-6 | 489 | 15.9 | 16.4 | 20.68 | KM Plot |
| THCA | rs231925 | chr16:20665398 | A/C | 4.03E-6 | 489 | 15.9 | 16.4 | 20.68 | KM Plot |
| THCA | rs231926 | chr16:20665851 | A/T | 4.03E-6 | 489 | 15.9 | 16.4 | 20.68 | KM Plot |
| THCA | rs231927 | chr16:20667868 | G/A | 3.48E-6 | 490 | 15.9 | 16.4 | 20.68 | KM Plot |
| THCA | rs231929 | chr16:20669643 | T/C | 3.48E-6 | 490 | 15.9 | 16.4 | 20.68 | KM Plot |
| THCA | rs2324931 | chr6:87174456 | T/C | 1.75E-14 | 480 | 15 | 16.8 | 25.67 | KM Plot |
| THCA | rs232564 | chr2:38395518 | C/T | 0.000233 | 485 | 15.97 | 15.87 | 16.37 | KM Plot |
| THCA | rs232566 | chr2:38394836 | C/T | 0.000206 | 488 | 15.97 | 15.9 | 16.37 | KM Plot |
| THCA | rs232569 | chr2:38394363 | A/G | 0.000289 | 490 | 16.37 | 15.87 | 15.93 | KM Plot |
| THCA | rs232574 | chr2:38387227 | C/A | 0.000171 | 478 | 15.93 | 16.2 | 15 | KM Plot |
| THCA | rs2326992 | chr6:7875630 | G/A | 1.24E-14 | 485 | 15.83 | 16.87 | 7.07 | KM Plot |
| THCA | rs234286 | chr16:20656811 | C/A | 4.05E-6 | 488 | 15.87 | 17.55 | 20.68 | KM Plot |
| THCA | rs2343550 | chr10:82264423 | G/A | 6.77E-6 | 488 | 16.33 | 14.93 | 14.93 | KM Plot |